
This isn't exactly about creationism/evolution, but it's still pretty cool. And I will find a way to tie it in, since I haven't blogged on PT in, I think, months.
Contrary to what creationists believe, evolutionary biologists don't sit around in biology departments plotting to overthrow God and morality. We spend our time doing things like statistics and programming and specimen preparation and experimental manipulation and DNA sequencing and field observation, and then give and hear talks and discussions about this research. The main thing we are interested in is not "proving evolution", it is discovering cool facts and devising hypotheses to explain them, and then devising tests of those hypotheses (typically, statistical tests, something which creationists almost always ignore). In short, it's like any other science.
This paper is a case in point:
NATURE | REVIEW
Barnosky, Anthony D.; Matzke, Nicholas; Tomiya, Susumu; Wogan, Guinevere O. U.; Swartz, Brian; Quental, Tiago B.; Marshall, Charles; McGuire, Jenny L.; Lindsey, Emily L.; Maguire, Kaitlin C.; Mersey, Ben; Ferrer, Elizabeth A. (2011). "Has the Earth's sixth mass extinction already arrived?" Nature 471(7336), 51-57. (DOI - Link)
Abstract
Palaeontologists characterize mass extinctions as times when the Earth loses more than three-quarters of its species in a geologically short interval, as has happened only five times in the past 540 million years or so. Biologists now suggest that a sixth mass extinction may be under way, given the known species losses over the past few centuries and millennia. Here we review how differences between fossil and modern data and the addition of recently available palaeontological information influence our understanding of the current extinction crisis. Our results confirm that current extinction rates are higher than would be expected from the fossil record, highlighting the need for effective conservation measures.
It emerged from a seminar course on mass extinctions, taught by Berkeley paleontologist Tony Barnosky. The graduate students included zoologists, anthropologists, computer/modeling types (that's me), and paleontologists. While reviewing the literature on mass extinction, we got to discussing what it means to say that we are currently "in the Sixth Mass Extinction". There are different ways to measure extinctions, e.g. by absolute magnitude (mass extinctions have typically been defined as situations where 75% of species go extinct) or by rates of extinction far above the typical background rate. The difficulty with comparing mass extinctions in the paleontological record to the current extinction crisis is that the paleontological record has very coarse resolution compared to human time scales. You are doing very well in paleontology if you can date an extinction event to +/-300,000 years -- but this uncertainty in dating an event is much larger than all of recorded human history! In addition, for various reasons it is common in geology, paleontology, and evolution, that the shorter the period of time over which you measure something, the more variability in rate you tend to see, and this variability gets smoothed out when you average over longer time intervals. Thus, extinction events in the fossil record can be "smoothed" by the coarse-resolution data than they may have been in real life. Similarly, the current rate of extinction might, hypothetically, fall within the range of extinction rates that happen in "regular" background extinction, when background extinction is measured at short time intervals.
Since it is pretty important for us to know whether or not our current extinction crisis compares to mass extinction events, we proposed some ways of turning the "apples and oranges" comparison of the fossil and modern data into something more like an "apples and apples" comparison. Basically this can be attempted by looking at both the fossil record and the modern record at a variety of time-resolutions. We can also examine what the future might look like under different scenarios: e.g. what is the extinction rate if all currently endangered species were to go extinct; what is it if all endangered + threatened species go extinct, etc., and how long does it take us to get to a mass extinction under each of these scenarios? Basically our conclusion was that even under the most conservative assumptions, we are still at an extinction rate that is very elevated compared to the fossil background extinction rate. Depending on the scenario, we reach a 75% "mass extinction" (for certain well-studied groups) within a few hundred to a few thousand years, if, as people say, "current rates continue." This is a geological eyeblink.
Obviously, given the study we made of how extinction rates can be variable, we are not so naive as to
predict that a mass extinction will come for sure in a few hundred or a few thousand years. This would be fatalistic and unscientific. Rather, what we say is that we are currently on that path. Taking a different course will require that humans recognize the problem and make decisions to avoid it.
Anyway: this is one small example of the kind of evolution-related research that happens in one department on one campus. It is one of hundreds of evolution articles published by Berkeley researchers each year, and one of tens or hundreds of thousands of such articles published each year around the world. It's routine. It may seem strange to creationists and other wildly amateur commentators on the field of evolutionary biology, but this is the kind of thing that is going on every day of every week in biology departments. It's about the furthest possible thing from being some kind of conspiracy or plot against creationism, God, the Bible, morality, etc. It's just us doing our day jobs, just like all of the other scientists on campus.
References and press
Barnosky, Anthony D.; Matzke, Nicholas; Tomiya, Susumu; Wogan, Guinevere O. U.; Swartz, Brian; Quental, Tiago B.; Marshall, Charles; McGuire, Jenny L.; Lindsey, Emily L.; Maguire, Kaitlin C.; Mersey, Ben; Ferrer, Elizabeth A. (2011). "Has the Earth's sixth mass extinction already arrived?"
Nature 471(7336), 51-57. (
DOI |
Link)
Drake, Nadia (2011). Scientists try to determine whether life on Earth is quickly heading toward extinction.
San Jose Mercury News. San Jose, CA. (
Link)
Gibbons, Ann (2011). "Are We in the Middle of a Sixth Mass Extinction?"
ScienceNOW. (
Link)
Sanders, Robert. (2011). "Has the Earth's sixth mass extinction already arrived?" Retrieved March 2, 2011, from
http://newscenter.berkeley.edu/2011/03/02/has-the-sixth-mass-extinction-already-arrived/.
Pappas, Stephanie (2011). 6th mass extinction looms but preventable, study says.
LiveScience, MSNBC. (
Link)
NSF. (2011). "Earth's Sixth Mass Extinction: Is It Almost Here?" Retrieved March 2, 2011, 2011, from
http://www.nsf.gov/news/news_summ.jsp?cntn_id=118804&WT.mc_id=USNSF_51&WT.mc_ev=click.
92 Comments
Wheels · 2 March 2011
I would be very depressing to have to tell the next generation that we're the dino-killing comet of our time.
Mike Elzinga · 3 March 2011
I would be curious about comparisons within recorded human history of how human populations stressed their environments and what the socio/political responses and consequences were.
We have records of societies going extinct (e.g., Easter Islanders, Mayans) and even data on what these societies were doing at the time.
Now we are dealing with a situation in which the human footprint is global and is affecting climate as well as thousands of other species. What kind of responses are we seeing from our socio/political systems, and how do these compare with what we know of the past?
Since the human impact on the planet is so large, that might give some idea of where we are headed.
From the physicist’s perspective, we life forms are starting to push the limits of the tiny energy window in which we all survive.
Terenzio the Troll · 3 March 2011
John Kwok · 3 March 2011
John Kwok · 3 March 2011
Nick,
Congratulations on colloborating on what looks like is an important contribution to our understanding of mass extinctions as seen from both the fossil record as well as the Recent (Holocene) Epoch. Hope you have a .pdf since I'm going to contact you in private about getting a copy.
Appreciatively,
John
D. P. Robin · 3 March 2011
Nick, that looks hugely interesting and exciting, but does that mean you've raised the curtain on the debate concerning the existence of AME (Anthropogenic Mass Extinction)?
dpr
fnxtr · 3 March 2011
DS · 3 March 2011
Well if global climate change is real, what else would you expect to happen?
It has always amazed me how the average creationist can ignore all of the ecological implications of a young earth. If you start with that as a non negotiable presupposition, analyses such as this are impossible. Of course, that just makes it that much easier to ignore the ecological consequences of your actions.
It also amazes me that creationists typically cannot understand the role of death in evolution. It's almost as if the fact that other organisms die and other species go extinct is a dirty little secret that no one can talk about. EIther they are just afraid to face their own mortality, or they realize on some level that nature is just the way it is whether they like it or not.
Paul Burnett · 3 March 2011
Long article about this in this morning's San Jose (CA) Mercury News at http://www.mercurynews.com/ci_17523672?source=most_viewed
eric · 3 March 2011
harold · 3 March 2011
harold · 3 March 2011
Nick Matzke -
Forgive me if some of this is dealt with in the paper, but here are a few interesting issues -
1) Common definition of extinction for field biology and paleontology. For example, let's say a finely resolved big cat species were to go extinct; Bengal Tiger, for example. That would be noticed as an extinction by field biology. But there would be other tigers, which might not be differentiable as different species by paleontology (putting aside species definition debates). There would be other very closely related big cats that we don't even recognize as "tigers". Obviously, just looking at percentage of recognized species is one pretty good way of handling this - arguably that should correct the "more extinctions if you can detect more species" bias. But I wonder if real time observation biases in favor of observing extinctions. This comment does NOT IN ANY WAY reflect any doubt in my mind that humans are provoking an unfavorable decrease in biodiversity with their current behavior. It's just a technical thought.
2) Proportion of overall multicellular biomass the goes extinct. Although both are likely to be undesirable, replacement of multiple species by a few species, but with no overall decrease of biomass, versus massive short term reduction in multicellular biomass, are different things.
Obviously, I think that your research advances understanding of and further clarifies human impact on the rest of the biosphere.
The Founding Mothers · 3 March 2011
The Founding Mothers · 3 March 2011
Hmmmm, I guess I assumed that Global Climate Change driven largely by fossil fuel consumption was the most important driver of the next Mass Extinction. This might not be true. There are a range of other human actions that drive species loss - habitat loss, poisoning and fragmentation, unsustainable harvesting and so on.
But the message remains - it's worth investing in research that explores alternatives to the way we've been doing things, especially when we are confident that past practice was harmful.
Paul Burnett · 3 March 2011
Mike Elzinga · 3 March 2011
John Kwok · 3 March 2011
Terry Maxwell · 3 March 2011
Getting the populace at large to respond appropriately to the global implications of articles like Barnosky et al. requires that they pay attention, and that may be insurmountable. As a 35 year biology professor, it seems clear that the major impediment to learning in classrooms is just paying attention. The businessmen who frequent the deli where I breakfst consider all concerns about subjects like extinction rate to be of importance only to a certain core of intellectuals who find that subject personally interesting. Everyone else then is free to ignore it. They pay no attention to protestations about their lack of attention. It's maddening.
harold · 3 March 2011
Paul Burnett -
1) The relationship between the size range in which an individual organism is found and the proportion of the biomass made up of that size range of organisms is interesting.
I won't bother to calculate the mass of an individual here, but it will, of course, tend to be a function of the cube of a single dimension.
A "typical" prokaryotic cell has a diameter of about a few micrometers, with many variable examples http://hypertextbook.com/facts/2001/JoyceWong.shtml. Prokaryotes make up a huge proportion of the biomass. Exempting viruses, I'm not aware of the concept of extinction even being applied to prokaryotic lineages. Study of prokaryotes is overwhelmingly driven by applications, mainly medical, also industrial. "Pure" study of incidental prokaryotes is potentially fascinating but only a tiny fraction of microbiology, although study of extremophiles has had profound impact on biology.
A "typical" unicellular eukaryote is hard to describe, as many plankton species are almost as small as bacteria, for example, whereas many familiar examples like yeast and amoebae are more in the 10 micrometer diameter range, with much variation (very small eukaryotes probably evolved their smaller size). It could be crudely approximated that an "average" unicellular eukaryote has about 100 or so times the mass of an "average" prokaryote, and that's probably within an order of magnitude. I haven't heard much use of the concept of extinction applied to unicellular eukaryote lineages, either, even though some of them use sexual reproduction.
I assume there is a greater biomass of prokaryotes than of unicellular eukaryotes, although I am not sure.
Multicellular animals obviously range from not much bigger than a few large unicellular eukaryotes (dust mites have a diameter of about 500 microns) to vast. There is a clear tendency for lineages with smaller individual size to actually make up a greater percentage of the biomass. For example, an individual adult bear of any species is much larger than an individual adult ant of any species, but ant-sized organisms make up a vastly higher proportion of the biomass than bear- sized organisms. Indeed, this relationship appears to be non-linear, proportion of the biomass seems to drop off sharply in animals, as individual size increases. A major outlier is the fairly large biomass of humans.
I'm not sure if it works the same way with plants. The large biomass of trees would seem to argue otherwise.
Clearly, the concept of extinction is mainly applied to large animals, especially mammals and birds, and to a lesser degree to large plants. It's much harder to define species at all when dealing with microbes (not that's it's easy otherwise).
Getting back to the extinction-due-to-replacement versus extinction-due-to-overall-decrease-in-biomass distinction, I will note that any event that had a global effect of markedly reducing availability of solar energy would affect ALL levels of the biomass, except in a few very weird, isolated environments.
Nick (Matzke) · 3 March 2011
Barnosky has done some really interesting work on how much of the global Net Primary Productivity humans have taken over from the rest of life. It's pretty huge, e.g. most large animals have been made extinct or restricted to parks, and human crops and livestock have taken over that entire ecological space.
He notes that part of what keeps us going well above the natural biomass carrying capacity, based on natural NPP, is fossil fuel input. But that has it's own problems, and a time limit as well...
Mike Elzinga · 3 March 2011
Some of you may remember Al Bartlett and his Forgotten Fundamentals of the Energy Crisis.
For those who don’t have the back-of-the-envelope math, it’s worth spending some time with.
Bartlett has also written a paperback book entitled The Essential Exponential! put out by the Center for Science, Mathematics & Computer Education, University of Nebraska, Lincoln.
I don’t know if it is still available in print.
Paul Burnett · 3 March 2011
Mike Elzinga · 3 March 2011
poe · 3 March 2011
Wait a minute! 5 mass extinctions? Are you trying to say there were 5 global floods? And, of course, they all occurred in the last 6000 years.
There I win! I beat FL et al in making the first intelligence-free comment!
And we all know that evolutionary biologists may not sit around in biology departments plotting to overthrow God and morality -- it's standing room only.
;)
Terenzio the Troll · 3 March 2011
Terenzio the Troll · 3 March 2011
Jim Thomerson · 3 March 2011
We recognize past mass extinctions because dominant plants and animals were extirpated or greatly reduced in diversity. As a species which thinks itself dominant, isn't the lesson of earth history that, as the present mass extinction runs its course, we are likely to be in deep trouble?
Robert Byers · 3 March 2011
This yEC says this paper is not doiung any science. In fact its not doing biology.
All your info is based on geology presumptions and then you draw some biological conclusions.
Biology is about living things and studying them and to study them one must be dealing with a living/or recently living thing.
Casts of former living things is not biology.
This thread makes a good point for creationism.
Further i question that there is anything of the prestige of "science" going on here.
This subject can not draw forth much data to work with in order to draw conclusions.
It all looks like just more green "science" making speculations .
They get paid for this?
Are they aware some diseases are still not cured?
Mike Elzinga · 3 March 2011
John Harshman · 3 March 2011
Nick, your paper made the San Jose Mercury News, and in a form that wasn't so garbled that I couldn't figure out what it was about. Big science!
Stanton · 3 March 2011
So, Robert Byers, what diseases has Creationism cured?
Hercules Grytpype-Thynne · 3 March 2011
Dale Husband · 4 March 2011
Terenzio the Troll · 4 March 2011
Rolf Aalberg · 4 March 2011
Do our funny visitor have any clue about how much time and effort scientists spend in both fruitful and fruitless (hopefully some of those too) efforts at finding faults,errors or mistakes, or anything else that might be less than optimally possible in the results of their own work as well as that of other scientists?
I bet Robert doesn't even have any clue about what great scientific effort lie behind the development of things like the computers he probably 'mingle' with every day? Does he think physics or computer scientists are some superior breed compared with their biology peers?
eric · 4 March 2011
Nick Matzke · 4 March 2011
eric · 4 March 2011
Thanks for the answer!
OT question - I thought you had published a journal article specifically on the cdesign proponentists phenomena. But I can't find it. I found your Biochem J. (2009) review article but that wasn't what I was thinking of. Can you point me to the reference, or am I imagining something that doesn't exist?
Nick Matzke · 4 March 2011
There was the article in Evolution Education & Outreach last year, May 15 or so...
Nick Matzke · 4 March 2011
Heh so I'm totally on TV right now and typing so it looks like I'm working....
type type type type
....
123456789
Glenn Branch · 4 March 2011
Nick, you're live-blogging your B-roll?
sparc · 4 March 2011
You will find an article on your publication in the German magazine Der Spiegel
Richard Hendricks · 4 March 2011
Nick,
It's too bad we can't compare present populations of bats vs fossil populations. It would be good to know if WNS or similar epidemics had occurred before.
http://www.batcon.org/index.php/what-we-do/white-nose-syndrome.html
nmgirl · 4 March 2011
nmgirl · 4 March 2011
The Founding Mothers · 4 March 2011
Frank J · 4 March 2011
John Kwok · 4 March 2011
John Kwok · 4 March 2011
John Kwok · 4 March 2011
Mary Anne Erwin · 5 March 2011
I noticed this study didn't include the inputs of either a climatologist or an oceanographer and I'm wondering if this would've had any impact on the results. I think even 300 years is way too optimistic especially considering the idea that my lifetime is a mere blip in geological time and I can see these changes taking place with my own eyes.
I think many people think of extinction events as happening very quickly, as in the asteroid scenario, where one minute everything is fine and the next entire species are extinct. This one won't happen like that, and if we keep it up it's not going to take 300 years to drive 75% of all earth species into extinction. This event is already underway.
John Kwok · 5 March 2011
Frank J · 5 March 2011
harold · 5 March 2011
harold · 5 March 2011
mrg · 5 March 2011
John_S · 5 March 2011
mrg · 5 March 2011
mrg · 5 March 2011
Alas, it is vastly easier to cook up baloney than it is to refute it ... much easier to spray graffiti over a wall than clean it up. The good thing is that anyone with sense generally sees the baloney for what it is. The bad thing is that the baloney isn't targeted at people with sense.
harold · 5 March 2011
mrg · 5 March 2011
Mike Elzinga · 5 March 2011
Frank J · 6 March 2011
Frank J · 6 March 2011
Flint · 6 March 2011
I think the appeal of teaching the controversy is to peoples' sense of fairness. But fairness applies to legitimate differences of viewpoint or opinion, not to whether apples fall up or down.
And the underlying subtext, therefore, is that scientific findings and religious faith are BOTH legitimate viewpoints or opinions. The notion that there exists an objective universe which is the object of scientific inquiry is simply not understood. By probably a majority of Americans.
I suspect much of the world is more immune to this appeal to fairness, not because they're unfair, but because they are not predisposed from early childhood to "adjust" reality to fit religious preconceptions.
I think it's human nature to decide what you wish were true, and then try to interpret reality accordingly. Even in science, a hypothesis must be carefully constructed to avoid confirmation bias. Gould was always complaining that when paleontology students sampled fossils of some critter over long periods of time and found no changes, they discarded that line of investigation because they found "no evolution", and couldn't get published. The model SAID that organisms undergo constant slow change over time. Therefore that's what they DO. Evidence to the contrary simply was not evidence, and was ignored. Sound familiar?
Mike Elzinga · 6 March 2011
National Geographic’s March 6, 2011 Picture of the Day shows Australia’s “Paluxy Riverbed” version of “giants walking the Earth.”
Thus, there is “proof” in Australia that there is no such thing as mass extinctions; there is only genetic entropy making things worse since the fall. Everything was bigger and better back then.
Since these weren’t wiped out by the Flood, there must have been giants on the ark, because giants are bigger and better.
[/AiGICRthinkingmode]
John Kwok · 6 March 2011
Mike Elzinga · 6 March 2011
John Kwok · 6 March 2011
Just Bob · 6 March 2011
Frank J · 6 March 2011
Flint · 6 March 2011
What you need to account for (or at least account for it more clearly) is that creationist distortions are far from uniform. They twist ONLY those aspects of reality they think conflict with indoctrinated beliefs, which are fairly limited. They have no problem with genetic change over time EXCEPT where the ramifications refute their scriptures. They have no problem with the speed of light EXCEPT where the ramifications refute their scriptures. Same with radioactive decay, erosion of riverbeds, and so on.
In fact, creationists seem to understand and accept nearly everything science determines, with that one glaring exception that where science and scripture come into perceived conflict, scripture wins. I think the notion that science must be internally consistent if reality is, is a bit too abstract - creationist live with two realities - REAL reality, which is where they live nearly all day every day, and creationist reality, which is the list of necessary paradoxes required by intractable misunderstandings.
The appeal to "fairness" is of course nothing of the kind, it is simply a way to force the camel's nose into the tent by claiming it's not a tent, not a nose, and not a camel. They just noticed that people like "fairness" and used that leverage to phrase their nonsense, just as they noticed that people root for the underdog and used THAT leverage to become "persecuted" (by the small minority, but who's counting?)
Frank J · 6 March 2011
Michael J · 6 March 2011
I've read somewhere that 3/4 of young people are leaving the various fundie churches. While this is probably due to factors other than seeing through the creationism scam, it would be interesting to see peoples thoughts about evolution broken down by age.
Mike Elzinga · 6 March 2011
Mike Elzinga · 6 March 2011
Flint · 6 March 2011
Hey, fieldwork is what found the Paluxy River footprints, and what determined that the Grand Canyon was carved overnight in magic mud, and how they discovered the polonium halos. Dembski and Marks are in the lab even now discovering any number of assumptions according to which evolution can't happen and then demonstrating it.
Dale Husband · 6 March 2011
Michael J · 7 March 2011
I found this interesting (2009) http://www.wnd.com/index.php?fa=PAGE.view&pageId=100324 . Part of the study found that kids who went to Sunday School were more likely to leave. Ken Ham of course thinks it is because there is not enough creationism taught.
I think that it would be the opposite - my kids ask enough awkward questions and I have no reason to lie to them, I could image what a precocious child could ask about the ark etc.
raven · 7 March 2011
Frank J · 7 March 2011
Just Bob · 7 March 2011
Stuart Weinstein · 7 March 2011
Henry J · 7 March 2011
Like in Evan Almighty?
Robert Byers · 9 March 2011
Just Bob · 10 March 2011
Robbie, seriously, is English your native language?
Henry J · 10 March 2011
If he's Canadian, maybe he's from the French speaking part?
Atwood Viking Refrigerator Repair · 10 March 2011
Parece post muy informativo en este blog, va a marcar esta uno para no perder nada en el futuro.
Irvine Dryer Repair · 11 March 2011
Me gusta este blog mucho, uno realmente muy interesante y me gustaría darles las gracias por el modo de dar estas instrucciones,
Newport Beach Dishwasher repair · 11 March 2011
Yo también soy un buen aficionado de este equipo. También me sentí muy feliz cuando Madden 10 trajo la serie de vuelta. Fue un momento memorable para ellos.
Terrell Bernabo · 17 March 2011
We are getting ready to go to El Salvador in 2011, I really enjoy reading about it, I want to know more about the people of El Salvador how they live and where they live
Accomodation Novalja · 5 April 2011
like this blog