The paper in question is Davis, M.C., Dahn, R.D., Shubin, N.H. An autopodial-like pattern of Hox expression in the fins of a basal actinopterygian fish. Nature. 2007. Vol. 447. Pages 473 - 476.1. Evolution predicts that genetic complexity is gained gradually, but specific genetic material for creating advanced features appeared "long before" in organisms that supposedly evolved millions of years earlier:
Source: Hox gene research and new data on how fish grew feet"Long before animals with limbs (tetrapods) came onto the scene about 365 million years ago, fish already possessed the genes associated with helping to grow hands and feet (autopods) report University of Chicago researchers ... The capability of building limbs with fingers and toes existed for a long period of time, but it took a set of environmental triggers to make use of that capability... 'It had the tools,' he said, 'but it needed the opportunity as well.'"
— Who Is Your Creator
As the press release observesAbstract Comparative analyses of Hox gene expression and regulation in teleost fish and tetrapods support the long-entrenched notion that the distal region of tetrapod limbs, containing the wrist, ankle and digits, is an evolutionary novelty. Data from fossils support the notion that the unique features of tetrapod limbs were assembled over evolutionary time in the paired fins of fish. The challenge in linking developmental and palaeontological approaches has been that developmental data for fins and limbs compare only highly derived teleosts and tetrapods; what is lacking are data from extant taxa that retain greater portions of the fin skeletal morphology considered primitive to all bony fish. Here, we report on the expression and function of genes implicated in the origin of the autopod in a basal actinopterygian, Polyodon spathula. Polyodon exhibits a late-phase, inverted collinear expression of 5' HoxD genes, a pattern of expression long considered a developmental hallmark of the autopod and shown in tetrapods to be controlled by a 'digit enhancer' region. These data show that aspects of the development of the autopod are primitive to tetrapods and that the origin of digits entailed the redeployment of ancient patterns of gene activity.
In other words, the original hypothesis was that a 'dramatic change' was required for limbs to develop. Such a position would be a much larger problem for evolutionary theory than finding that the re-use of a duplicated hox gene for limb evolution explains the origin and evolution of the tetrapod limb. The problem was that science was using the zebra fish as a representative species which does not show a second stage of hox expression. However, the paddlefish does show such a second stageThis finding overturns a long-held, but much-debated, theory that limb acquisition was a novel evolutionary event, requiring the descendents of lobed-fin fish to dramatically alter their genes to adapt their bodies to their new environments of streams and swamps.
In other words, the evidence ties together fins and limbs using genetic data. However, the genetic data is not the only evidenceTetrapods have a second phase of Hox gene expression that happens later in development. During this second phase, hands and feet develop. Although this second phase is not known in zebrafish, the scientists found that it is present in paddlefish, which reveals that a pattern of gene activity long thought to be unique to vertebrates with hands and feet is in fact much more primitive.
Source: Neil H. Shubin, Edward B. Daeschler, Farish A. Jenkins (2006), The pectoral fin of Tiktaalik roseae and the origin of the tetrapod limb, Nature 440, pp. 764-771 and in fact recent research Boisvert further strengthened the fossil evidence Source: Catherine A. Boisvert, Elga Mark-Kurik, Per E. Ahlberg (2008), The pectoral fin of Panderichthys and the origin of digits, Nature (21 Sep 2008), Letters to Editor This form of co-option is a common evolutionary strategy, and in fact countless other instances of co-option show how prevalent this form of evolutionary variation is. While some may see this as disproving evolutionary theory because it is an 'abrupt' rather than a 'gradual' change, they are missing the point that evolution modified pre-existing variation to modify the secondary stage of fin formation to limb formation. In fact, this in what other authors, who found similar two stage expressions in sharks, have proposedThis is the first molecular support for the theory that the genes to help make fingers and toes have been around for a long time--well before the 375-million-year-old Tiktaalik roseae, the newly found species discovered in 2004 by Shubin and colleagues. Tiktaalik provided a missing evolutionary link between fish and tetrapods and was among the first creatures that walked out of water onto land.
Renata Freitas, GuangJun Zhang, Martin J. Cohn Biphasic Hoxd Gene Expression in Shark Paired Fins Reveals an Ancient Origin of the Distal Limb Domain, PLoS ONE 2(8): e754. 2007The results indicate that a second, distal phase of Hoxd gene expression is not uniquely associated with tetrapod digit development, but is more likely a plesiomorphic condition present the common ancestor of chondrichthyans and osteichthyans. We propose that a temporal extension, rather than de novo activation, of Hoxd expression in the distal part of the fin may have led to the evolution of digits.
(1) Augustine "A.D. 354-430) The Literal Meaning of Genesis (De Genesi ad litteram libri duodecim) translated by by J. H. Taylor in Ancient Christian Writers, Newman Press, 1982, volume 41. p42
Usually, even a non-Christian knows something about the earth, the heavens, and the other elements of this world, about the motion and orbit of the stars and even their size and relative positions, about the predictable eclipses of the sun and moon, the cycles of the years and the seasons, about the kinds of animals, shrubs, stones, and so forth, and this knowledge he hold to as being certain from reason and experience. Now, it is a graceful and dangerous thing for an infidel to hear a Christian, presumably giving the meaning of Holy Scripture, talking nonsense on these topics; and we should take all means to prevent such an embarrassing situation, in which people show up vast ignorance in a Christian and laugh it to scorn. The shame is not so much that an ignorant individual is derided, but that people outside the household of the faith think our sacred writers held such opinions, and, to the great loss of those for whose salvation we toil, the writers of our Scripture are criticized and rejected as unlearned men. If they find a Christian mistaken in a field which they themselves know well and hear him maintaining his foolish opinions about our books, how are they going to believe those books in matters concerning the resurrection of the dead, the hope of eternal life, and the kingdom of heaven, when they think their pages are full of falsehoods on facts which they themselves have learned from experience and the light of reason? Reckless and incompetent expounders of Holy Scripture bring untold trouble and sorrow on their wiser brethren when they are caught in one of their mischievous false opinions and are taken to task by those who are not bound by the authority of our sacred books. For then, to defend their utterly foolish and obviously untrue statements, they will try to call upon Holy Scripture for proof and even recite from memory many passages which they think support their position, although they understand neither what they say nor the things about which they make assertion.
35 Comments
Glen Davidson · 15 October 2008
http://tinyurl.com/2kxyc7
Ravilyn Sanders · 15 October 2008
They will pull a Palin and claim this entire line of argument "vindicates" them.
Dale Husband · 15 October 2008
snaxalotl · 16 October 2008
nice. very nice. but all this is wasted on Who Is Your Creator. On the website, I got to the first item on one of the lists of disproofs of evolution; a citation essentially saying "in transitional forms, intermediacy is generally an intermediate mixture of traits, rather than a set of intermediate traits". That this was posted demonstrates an abject inability to grasp relatively simple statements, let alone comprehensive discussions of hox genes. Whoever assembles these lists probably accepts any material claimed to be damaging to evolution without further mental engagement.
Alloytoo · 16 October 2008
Forgive my ignorance, but shed of technicalities, isn't "Preadaptation" another way of describing how neutral mutations suddenly become advantagous as conditions change.
Pretty much as I understand puntuated equilibrium?
Stanton · 16 October 2008
who is your creator · 16 October 2008
Thank you for the exposure and proving once again that it always comes down to trying to deny God, doesn't it?
So, the explanation for the miraculous appearance of genes producing features not physically manifested yet is:
"The results indicate that a second, distal phase of Hoxd gene expression is not uniquely associated with tetrapod digit development, but is more likely a plesiomorphic condition present the common ancestor of chondrichthyans and osteichthyans. We propose that a temporal extension, rather than de novo activation, of Hoxd expression in the distal part of the fin may have led to the evolution of digits."
Propose all you wish but we prefer empirical evidence so when you prove it, let us know.
Keep in mind that the hypothesis for PE is NOT backed up with empircal science and still hangs out there pseudoscience:
“Punctuated equilibrium helped to explain why many transitional forms apparently were missing from the fossil record. According to the hypothesis of punctuated equilibrium, transitional forms existed for brief periods of time, and so were unlikely to become fossils …
This view has not been universally accepted, by paleontologists or biologists working with modern species.”
http://paleobiology.si.edu/geotime/main/foundation_life3.html
I can't to hear your 'proposals' for the below research:
“Despite being developmentally simple–with no organs or many specialized cells–the placozoan has counterparts of the transcription factors that more complex organisms need to make their many body parts and tissues. It also has genes for many of the proteins, such as membrane proteins, needed for specialized cells to coordinate their function. “Many genes viewed as having particular ‘functions’ in bilaterians or mammals turn out to have much deeper evolutionary history than expected, raising questions about why they evolved,” says Douglas Erwin, an evolutionary biologist at the Smithsonian National Museum of Natural History (NMNH) in Washington, D.C.”
http://darwiniana.com/2008/09/20/%E2%80%98simple%E2%80%99-animal%E2%
80%99s-genome-proves-unexpectedly-complex/
“A recently sequenced genome of sea urchin (see Fig. 1) represents another very clear example of a seemingly excessive genetic complexity. As mentioned above, the relatively simple sea urchin has about 24,000 genes, same as more complex vertebrates. Though sea urchin lacks eyes and, of course, brain, it has six opsins, belonging to several families found in humans, Drosophila, Scallops and other groups. While the presence of the opsins could be explained by their possible function in a simple light sensing, sea urchin has the entire set of orthologs of major genes involved in the eye development … Therefore, it appears that information on the eye development is encoded in the sea urchin genome, while no eye is actually developed, and thus the genetic information seems to be excessive.”
http://www.machanaim.org/philosof/nauka-rel/universal_genome.htm
“Another surprise came from a complexity of components of the immune system in sea urchin. In addition to an extremely well developed system of the innate immunity, these animals possess genes encoding major components of the adaptive immune response … Yet, sea urchin does not have antibodies, and possibly lacks adaptive immunity in general. Genes that are seemingly useless in sea urchin but are very useful in higher taxons exemplify excessive genetic information in lower taxons.”
http://www.machanaim.org/philosof/nauka-rel/universal_genome.htm
PvM · 16 October 2008
who is your creator · 16 October 2008
Since you obviously don't know that "more likely" and "propose" is NOT the same as "empirical evidence," debating with you is futile.
I'll wait for a more worthy opponent.
Ian · 16 October 2008
"who is your creator" said:
"Thank you for the exposure and proving once again that it always comes down to trying to deny God, doesn’t it?"
There is no denial of any god here. What there is, is an honest attempt to deal with what the currently available evidence shows, not what dogma would try to dictate.
If you want to make up stories about what your god did or didn't do, you're most welcome to. You're not welcome to try to impose those inventions on others.
But if you make up these stories, and then find that the facts deny your inventions, what's being denied here is your "just-so" stories, not any god. Get that right first.
"who is your creator" said:
"Propose all you wish but we prefer empirical evidence so when you prove it, let us know."
The empirical evidence of the fossil record is precisely what Eldredge & Gould used. When you have a peer-reviewed science supporting your own hypotheses, then by all means feel free to present it. Otherwise it just sounds like petulance and sour grapes, don't you find?
"who is your creator" said:
"Keep in mind that the hypothesis for PE is NOT backed up with empircal science and still hangs out there pseudoscience"
Why there is this dogma amongst creationists that the fossil record should somehow contain examples of every step in the evolution of every species from the first cell, right through to modern organisms is a complete mystery to me. Nothing in the Theory of Evolution claims that it should or does. Perhaps you can throw some light on that for us?
Alloytoo · 16 October 2008
PvM · 16 October 2008
eric · 16 October 2008
Paul Burnett · 16 October 2008
Romartus · 16 October 2008
James F · 16 October 2008
Dale Husband · 16 October 2008
Dale Husband · 16 October 2008
iml8 · 16 October 2008
slpage · 16 October 2008
Paul Burnett · 16 October 2008
eric · 16 October 2008
Paul Burnett · 16 October 2008
iml8 · 16 October 2008
snaxalotl · 16 October 2008
iml8 · 16 October 2008
Glen Davidson · 16 October 2008
http://tinyurl.com/2kxyc7
snaxalotl · 16 October 2008
snaxalotl · 16 October 2008
Dave Luckett · 16 October 2008
What gets me about it is the obvious sequence of the creationist argument:
"Prove it."
"Well, there's this evidence, and this evidence, and this evidence..."
"That isn't proof! You don't know everything, there's bits you can't explain, I won't believe that stuff over there, and I can't follow the arguments anyway. So you haven't proven it, so I win, yada yada yada."
Garbage. I'm not going down that road.
"Prove it."
"Look it up. There's a hundred and fifty years of research and a whole branch of science based on it. It works, and it has worked from the start. The hay's in the barn, the runs are on the board, the results are in. Now prove your account of creation, while I snigger and point out its blindingly obvious internal contradictions and multiple points where it requires yet another miracle. Or if you won't educate yourself, go away. Nobody's listening."
iml8 · 16 October 2008
MPW · 16 October 2008
Stanton · 16 October 2008
phantomreader42 · 17 October 2008
eric · 17 October 2008