Dinosaur soft tissue--just bacterial biofilm?

Posted 30 July 2008 by

An interesting new paper is just out today in PLoS ONE. You recall the announcement a few years back that soft tissue that resembled organic tissue had been isolated from a Tyrannosaurus femur. This started off a huge controversy in the field (and beyond)--researchers disagreeing with each other whether the structures seen were indeed blood cells and vessels; creationists crowing about how this finding represented "proof" that the earth was indeed young and dinosaurs had existed just a few thousand years ago; and of course, talk of cloning and DNA analysis. On the side of "soft tissue = dino blood" were findings that reported identification of the iron-containing protein heme (potentially from the red blood cells) and morphology of cells and vessels similar to that seen in modern-day ostriches and emu. However, the new paper by Kaye et al. provides an alternative explanation: that the structures aren't actual vessels and cells, but are instead iron-rich bacterial biofilms. Read the rest over at Aetiology...

109 Comments

Gary Hurd · 30 July 2008

Fascinating. Maybe I will need to write an update. Thanks for the post.

chuck · 30 July 2008

The original report was spun as physical evidence for creation.

How many nanoseconds before this opposing one is spun as physical evidence for creation?

Frank J · 30 July 2008

How many nanoseconds before this opposing one is spun as physical evidence for creation?

— chuck
Not many, but when it happens it will be another opportunity to (1) get YECs and OECs/IDers to challenge each other, or (2) not let another evasion of their irreconcilable differences go unnoticed.

GuyeFaux · 30 July 2008

Just pointing out a typo in the second sentence: "structures scene" should be "structures seen".

Mike Elzinga · 30 July 2008

chuck said: The original report was spun as physical evidence for creation. How many nanoseconds before this opposing one is spun as physical evidence for creation?
And you can bet that, if they do try to spin it, they will make it appear that science is in disarray and that ID/Creationists noticed this first. They will not mention that this is the normal process of scientific vetting, and they certainly will cover up the fact that ID/Creationists never ever admit contrary evidence once their own “research” has concluded that the data support ID/Creationism. (Sorry if this double posts. The screen locked up the first time through)

karl · 30 July 2008

Creationists spun this a lot as "soft tissue! dna! none of this could survive 60 million years!" One needed a very long, detailed explanation as to why that was a gross over simplification.

However, it was also the best friend of evolutionists as we could point out proteins matched closest to chickens. Hence, prediction, testing, and confirmation of the birds from dinosaurs hypothesis.

chuck · 30 July 2008

Then how many nanoseconds before they complete the trifecta and spin the fact that the reports disagree as evidence for creation? ;)

Frank J · 30 July 2008

And you can bet that, if they do try to spin it, they will make it appear that science is in disarray and that ID/Creationists noticed this first.

— Mike Elzinga
IDers might quote mine it to support their "'Darwinists' are in disarray" nonsense, but will conveniently leave out the fact that they do not consider it evidence for a young Earth or a young biosphere. And they will of course leave out the fact that the mismatched spin is clear indication that it is the ID/Creationists who are in hopeless disarray. Except in the area of fooling the public, alas, where they have "self-organized" into a "conspiracy" (the big tent) without overarching "design." IOW, despite the occasional criticism of the ID strategy by YEC groups.

Wheels · 30 July 2008

karl said: However, it was also the best friend of evolutionists as we could point out proteins matched closest to chickens. Hence, prediction, testing, and confirmation of the birds from dinosaurs hypothesis.
Yeah, I was wondering about that: the comparison between the organic materials and chicken collagen proteins. I guess that throws the chicken/T. rex comparison into question?

Gary Hurd · 30 July 2008

chuck said: The original report was spun as physical evidence for creation. How many nanoseconds before this opposing one is spun as physical evidence for creation?
Alternately, the creationists might insist this is an effort to supress the "damage" that so-called soft tissue preservation does to science. Schweitzer, and her colleagues will undoubtedly defend their results, which creationists will distort into the evilutionist thought police attempting to silence Schweitzer (who happens to be an evangelical Christian). There were two early papers by Schweitzer that I recall to have addressed some of the arguments in the PLOS article, specifically pyritic framboids were discussed in one of the PNAS articles. The new energy dispersive spectroscopy (EDS) results seem conclusive that the "blood cells" were framboids. I asked Schweitzer if she would be interested in a trace element analysis by scaning tunneling microsopy of her dissertaion material, but she had basically used it all up, and there were no voucher specimens for further analysis. This was too bad, but not a surprise given the number of different studies that had been done on what was very little bone. There was also an amino acid racemization result that I thought clearly argued against modern contamination. Also several times she (or coauthors) have at least mentioned the notion that bacteria could have "reworked" the original material (IIRC). The new paper does not seem to account for the immunological data, either from her dissertation or the later work she published. However, the infrared spectra in Fig 9 of Kaye et al 2008 holds considerable interest with implications to other studies of fossil collagen, eg; Embery G, Milner AC, Waddington RJ, Hall RC, Langley MS, Milan AM. 2003 "Identification of proteinaceous material in the bone of the dinosaur Iguanodon" Connect Tissue Res Vol. 44 Supplement 1: 41-6. Gurley, L., Valdez, J.G, Spall, W.D., Smith, B.F., and Gillette, D.D. 1991 "Proteins in the fossil bone of the dinosaur, Seismosaurus" Journal of Protein Chemistry, 0(1): 75-90.

Eric Finn · 30 July 2008

Since bacterial biofilms are formed in water-surface boundaries, we must conclude that the biofilms are ancient, but well preserved.
It this a correct statement?

Regards

Eric

Gary Hurd · 30 July 2008

As I recalled: Schweitzer and Horner (1999) addresses this issue of cellular preservation directly. The observed structures are not red blood cells -
Clearly these structures are not functional cells. However, one possibility is that they represent diagenetic alteration of original blood remnants, such as complexes of hemoglobin breakdown products, a possibility supported by other data that demonstrate that organic components remain in these dinosaur tissues.
And
Although they are not consistent with pyrite framboids, they may indeed be geological in origin, derived from some process as yet undefined; they may have their origin as colonies of iron-concentrating bacteria or fungal spores, or they may be the result of cellular debris, which clumped upon death, became desiccated, and then through diagenetic processes such as anion exchange or others not yet elucidated, became complexed with other, secondary degradation products. Schweitzer and Horner (1999: 189).
Schweitzer, Mary Higby, John R. Horner 1999 Intrasvascular microstructures in trabecular bone tissues of Tyrannosaurus rex, Annales de Paléontologie Volume 85, Issue 3, July-September , pg.179-192. See also Dino-blood and the Young Earth

Gary Hurd · 30 July 2008

Eric Finn said: Since bacterial biofilms are formed in water-surface boundaries, we must conclude that the biofilms are ancient, but well preserved. It this a correct statement? Regards Eric
Well, how about this: The organics, including bacteria, were of ancient source. The bacteria persist as spores over vast periods of time whe nthe bone is dessicated, but periodically the bone is saturated and they reactivate with less and less success due to our old friend, the second law. The resulting biofilm is unusually hardy more like a massively cross linked plastic than a tissue. I like it!

Gary Hurd · 30 July 2008

OHOHOH

The amino acids are racemic! This means that the sources of the bacterial amino acids are ancient, and (IMHO) the bacteria were probably using both L- and D- aa's anyway.

Draconiz · 30 July 2008

Wheels said:
karl said: However, it was also the best friend of evolutionists as we could point out proteins matched closest to chickens. Hence, prediction, testing, and confirmation of the birds from dinosaurs hypothesis.
Yeah, I was wondering about that: the comparison between the organic materials and chicken collagen proteins. I guess that throws the chicken/T. rex comparison into question?
I think it was a separate experiment. For the chicken-T-rex experiment,the scraps of dinosaur protein were wrested from a fossil femur discovered in 2003. While the Femur was discovered in 2005. Hope it helps

Gary Hurd · 30 July 2008

Draconiz said: I think it was a separate experiment. For the chicken-T-rex experiment,the scraps of dinosaur protein were wrested from a fossil femur discovered in 2003. While the Femur was discovered in 2005. Hope it helps
Actually, Schweitzer has immuno data for both MOR 1125 T. rex, and from her dissertation's material from entirely separate bone (See Dino-blood and the Young Earth)

jk · 30 July 2008

I have a small problem with this. Didn't they sequence proteins from that tissue, and positively identify it as the same 'substitute' bone tissue that female birds produce during ovulation? A form of collagen, wasn't it? I'm confused...

jk · 30 July 2008

I had missed some of those other comments. Are we talking about two different finds?

Eric Finn · 30 July 2008

Gary Hurd said: OHOHOH The amino acids are racemic! This means that the sources of the bacterial amino acids are ancient, and (IMHO) the bacteria were probably using both L- and D- aa's anyway.
I am not sure I understand this. I thought that only L-enantiomers were used since much earlier than 100 million years ago. Are there other explanations for the amino acid racemization? Regards Eric

Gary Hurd · 30 July 2008

jk said: I have a small problem with this. Didn't they sequence proteins from that tissue, and positively identify it as the same 'substitute' bone tissue that female birds produce during ovulation? A form of collagen, wasn't it? I'm confused...
Yep, you are confused. No proteins were ever sequenced. The medulary bone is a hard tissue, not a protein and is obvious to visual and micorscopic examination. I have tried to make a simplified version of the results, plus refuting the creationist dribble of Schweitzer's last round of papers in Dino Blood Redux. You will also find the references to the original papers relevant to the "soft tissue." The Medulary bone papers were in Science and PNAS, and are free to download.

Gary Hurd · 30 July 2008

Racemization would be wandering rather far form the OP. However, racemic peptides are not uncommon in bacteria. In fact L- and D- amino acids are found in all life, including humans. See my comment on this re: abiogenesis, also Here, and Here.

jk · 30 July 2008

this is why I'm confused: http://news.nationalgeographic.com/news/2007/04/070412-dino-tissues.html ...this article is totally erroneous?
Gary Hurd said:
jk said: I have a small problem with this. Didn't they sequence proteins from that tissue, and positively identify it as the same 'substitute' bone tissue that female birds produce during ovulation? A form of collagen, wasn't it? I'm confused...
Yep, you are confused. No proteins were ever sequenced. The medulary bone is a hard tissue, not a protein and is obvious to visual and micorscopic examination. I have tried to make a simplified version of the results, plus refuting the creationist dribble of Schweitzer's last round of papers in Dino Blood Redux. You will also find the references to the original papers relevant to the "soft tissue." The Medulary bone papers were in Science and PNAS, and are free to download.

Gary Hurd · 30 July 2008

jk said: this is why I'm confused: http://news.nationalgeographic.com/news/2007/04/070412-dino-tissues.html ...this article is totally erroneous?
I see where you are comming from now. The key quote is (IMNHO), "Asara's team isolated seven fragmentary chains of amino acids." These were exactly that and no more- 7 fragments of something with amino acids. They were not exclucively attributable to proteins, and so I won't call them proteins. That didn't stop Asara, and it might come bact to bite him. The gross irony is that in Schweitzer's dissertation material, she actually had something that was probably a 20 to 30 aa residue. But no sequencing was done.

Gary Hurd · 30 July 2008

jk said: this is why I'm confused: http://news.nationalgeographic.com/news/2007/04/070412-dino-tissues.html ...this article is totally erroneous?
I see where you are comming from now. The key quote is (IMNHO), "Asara's team isolated seven fragmentary chains of amino acids." These were exactly that and no more- 7 fragments of something with amino acids. They were not exclucively attributable to proteins, and so I won't call them proteins. That didn't stop Asara, and it might come back to bite him. (Not hard- he has tenure). The gross irony is that in Schweitzer's dissertation material, she actually had something that was probably a 20 to 30 aa residue. But no sequencing was done.

Eric Finn · 30 July 2008

Gary Hurd said: Racemization would be wandering rather far form the OP. However, racemic peptides are not uncommon in bacteria. In fact L- and D- amino acids are found in all life, including humans.
OK, thanks for taking the time to reply! Regards Eric

bornagain77 · 30 July 2008

The Cambrian Explosion - Darwin's Worst Nightmare

http://www.godtube.com/view_video.php?viewkey=13d268e7356e095e9cad

GuyeFaux · 30 July 2008

And the banana is the atheist's worst nightmare.

Gary Hurd · 30 July 2008

PS: There is an interesting defense by Asara and Schweitzer of their "protein" sequences against the criticism by Buckley et al.

Science 4 January 2008:
Vol. 319. no. 5859, p. 33
DOI: 10.1126/science.1147364

Technical Comments
"Response to Comment on "Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry"
John M. Asara and Mary H. Schweitzer

Science 4 January 2008:
Vol. 319. no. 5859, p. 33
DOI: 10.1126/science.1147046

Technical Comments

"Comment on "Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry"

Mike Buckley et al.

HR Pufnstuf · 30 July 2008

The propagandists for the religion of evolutionism thought that the existence of soft dinsaur tissue would win them more converts until Christians pointed out what that would mean for their "millions of years" fantasy--so now, they are in backtrack mode! From the paper:
An experiment was conducted to compare infrared spectra of modern biofilms with modern collagen and fossil bone coatings. Modern biofilms were grown on microscope slides from local pond water with high iron content. These slides developed EDS signatures of iron contamination within 2 weeks of formation. Sample coatings from fossil turtle carapace were submitted to infrared spectroscopy and compared to spectra of modern biofilms and modern collagen (Fig. 9). Fourier cross-correlation showed an 83% match between modern biofilms and fossil specimen with only a 37% correlation to modern collagen. This experiment suggests that modern biofilms share a closer molecular make-up than modern collagen to the coatings from fossil bones.
What a bunch of rubbish! They are just emissions from the part of the spectrum that confirms their pre-conceived conclusion! Why not visible? Why not ultraviolet? Why not x-ray? Hmmmm Of course, the real reason comes through later on:
The third structures recovered from the acid baths, were free floating osteocytes complete with fillapodia . (Fig. 10, A and B). Freshly fractured bone shows cross sections though many lacunae. SEM investigation of these lacunae before acid dissolution yielded the following results. Figures 10, C, D and E are several examples of material contained in the original lacunae. The variety of forms found (even in the same bone), indicates that the lacunae are not isolated pockets of exceptional preservation. The structures present are sub-micron spheres and rods, which are morphologically consistent with bacterial structures.
We have an assumption that anything preserved from the so-called dinosaur age requires some "extraordinary preservation" requiring "millions of years." What a crock! Old-earth, evolutionary question begging at its finest!

Jackelope King · 30 July 2008

bornagain77 said: The Cambrian Explosion - Darwin's Worst Nightmare http://www.godtube.com/view_video.php?viewkey=13d268e7356e095e9cad
My worst nightmare is this one where I'm being chased by a hallway made out of boxes of Fruitloops by Yosemite Same.

Frank J · 30 July 2008

Schweitzer, and her colleagues will undoubtedly defend their results, which creationists will distort into the evilutionist thought police attempting to silence Schweitzer (who happens to be an evangelical Christian).

— Gary Hurd
But both parties on the science side, evangelical Christian or not, will likely say that nothing in the debate vindicates creationism or ID, especially the absurd "alternate ages." Of course, like all the rebuttals, they will be minimally acknowledged, and thus drowned out, by the anti-evolution activists' propaganda. And their clueless followers will remember and parrot only their feel-good sound bites, and none of the "complications". Plus, after "Expelled" the ID gang will probably not hesitate in joining the YECs at playing up the "evangelical Christian" angle.

prof weird · 30 July 2008

HR Pufnstuf vomits forth some weapons grade idiocy with : The propagandists for the religion of evolutionism thought that the existence of soft dinsaur tissue would win them more converts until Christians pointed out what that would mean for their "millions of years" fantasy--so now, they are in backtrack mode!
'Interesting' delusions there puffer ! Evolution is a real process, and does not require propagandists (unlike creotardism, IDiocy, or theolunacy). Acceptance of reality/validity of evolution is not a religion, nor an '-ism' of any sort (unless you wish to call acceptance of reality 'realityism'). Theistic outlook IRRELEVANT to actual science (thus, whining that 'Xtians ruined the evilutionists' plot !!11!!' be really, REALLY stupid). The ages of the samples were derived from physics - when radiometric dating was being developed decades ago, it COULD have destroyed the ToE by showing the Earth is young; too bad that, IN REALITY, it strengthened it by showing the world is very old. What 'backtracking' are you wetting yourself about ? The YECers blithered that the fact there was organic material left 'proved' the samples must be young (thousands of years old).
From the paper:
An experiment was conducted to compare infrared spectra of modern biofilms with modern collagen and fossil bone coatings. Modern biofilms were grown on microscope slides from local pond water with high iron content. These slides developed EDS signatures of iron contamination within 2 weeks of formation. Sample coatings from fossil turtle carapace were submitted to infrared spectroscopy and compared to spectra of modern biofilms and modern collagen (Fig. 9). Fourier cross-correlation showed an 83% match between modern biofilms and fossil specimen with only a 37% correlation to modern collagen. This experiment suggests that modern biofilms share a closer molecular make-up than modern collagen to the coatings from fossil bones.
What a bunch of rubbish! They are just emissions from the part of the spectrum that confirms their pre-conceived conclusion! Why not visible? Why not ultraviolet? Why not x-ray? Hmmmm
'Emmisions from the part of the spectrum that confirms their pre-conceived conclusion' ? What festering lunacy was that ? Why, EXACTLY, would anyone presuppose that IR would conform to their pre-conceived conclusions ? Why, EXACTLY, would anyone assume that data derived from using any other frequency would NOT conform ? Or are you just a pompous jackass tossing words around in a flaccid attempt to look important ? They used frequencies that could give them USEFUL DATA, given the fact that organic molecules produce definitive signatures in the IR spectrum.
Of course, the real reason comes through later on:
The third structures recovered from the acid baths, were free floating osteocytes complete with fillapodia . (Fig. 10, A and B). Freshly fractured bone shows cross sections though many lacunae. SEM investigation of these lacunae before acid dissolution yielded the following results. Figures 10, C, D and E are several examples of material contained in the original lacunae. The variety of forms found (even in the same bone), indicates that the lacunae are not isolated pockets of exceptional preservation. The structures present are sub-micron spheres and rods, which are morphologically consistent with bacterial structures.
We have an assumption that anything preserved from the so-called dinosaur age requires some "extraordinary preservation" requiring "millions of years." What a crock! Old-earth, evolutionary question begging at its finest!
Given the FACT that the bones were indeed millions of years old, an unusual mechanism of preservation would be required. The evidence that the bones are NOT millions of years old is what again ? Oh, right - your pathological need to be 'special' in the universe, and a psychotic need for a tome of ancient morality tales to be somehow relevant to science.

iml8 · 30 July 2008

GuyeFaux said: And the banana is the atheist's worst nightmare.
I hadn't seen that before, though as a general sort of thing it is nothing new, indeed William Jennings Bryan would have been perfectly comfortable with it. I had the sound off and knew if I turned it on I would be off my game for the rest of the day, so I Googled for text explanations. "Paging Doctor Richard Paley, white courtesy phone. Dr. Paley, white courtesy phone please." White Rabbit (Greg Goebel) http://www.vectorsite.net/tadarwin.html

Tom Kaye · 30 July 2008

Hello All,

Tom Kaye from the PLoS paper signing in. I see there is the usual ID spam going on but if we can work around that I am willing to answer any reasonable questions.

Thanks

Tom Kaye

GuyeFaux · 30 July 2008

To be honest, I didn't know who Richard Paley was, so I googled him and I found this. Great stuff, all around, but what got me is this piece of "news":

Creationism Renaming Competition
11/29/2004 The Institute for Creationist Strategies is holding a Creationism Renaming Competition in order to develop a new name for Creationism that will be used for the next decade. "Intelligent Design," 1995's winner, has served us well in getting proper Biblical perspectives on Origins accepted by a public largely brainwashed into Secular Scientism by decades of Evolutionist propaganda, but like any marketing campaign, changes need to be made every so often to keep the message fresh. The ICS is offering a prize to the congregation of the winning entry. Please see their site for naming guidelines and submission information.

Still can't tell if Poe's Law applies, particularly after seeing "I'm a Zealot for Jesus" coffee-cups in the online store.

Gary Hurd · 30 July 2008

Tom Kaye said: Hello All, Tom Kaye from the PLoS paper signing in. I see there is the usual ID spam going on but if we can work around that I am willing to answer any reasonable questions. Thanks Tom Kaye
Howdy, Tom. I have read you paper through only once, and haven't done the close reading. I did wonder if you had sent an draft to Schweitzer for comment.

Science Avenger · 30 July 2008

HR Pufnstuf said: The propagandists for the religion of evolutionism...
Don't you twits understand that once you spew garbage rhetoric like that, all but the unwashed choir stop taking you seriously? Do you wear your tinfoil hat to your survivalist meetings?

James F · 30 July 2008

GuyeFaux said: Creationism Renaming Competition
11/29/2004
It must be over by now. Is that where they got "academic freedom?"

Tom Kaye · 30 July 2008

Howdy, Tom. I have read you paper through only once, and haven't done the close reading. I did wonder if you had sent an draft to Schweitzer for comment.

Hi Gary,

No we didn't send a final copy but Mary and I had an almost hour long conversation at my poster in 2006. There was nothing new in the manuscript and we figured for sure she would be a reviewer.

Tom

Gary Hurd · 30 July 2008

The most obvious counter argument I would expect from Schweitzer, and one I actually suspect to be true, is that you have found specimens that have been contaminated recently, and that is all. Schweitzer will reply that her samples were not contaminated recently, as demonstrated by a racemic aa mix from her extracted material.

So, she might conclude that the most you have shown is a potential mechanism for the formation of the features she has analyzed. (I mentioned this earlier in the thread.)

If you still have voucher material, I suggest a racimization check. I have no doubt about the racimization result given that your radiocarbon analysis showed a post-atomic result. But, I'd do it anyway.

Tom Kaye · 30 July 2008

Howdy, Tom. I have read you paper through only once, and haven't done the close reading. I did wonder if you had sent an draft to Schweitzer for comment.
Hello Gary, No we didn't send a final copy, but Mary and I spent almost an hour talking about it at my poster in 2006. There was nothing really new in the manuscript and we figured that for sure she would be a reviewer. Tom

Draconiz · 30 July 2008

Hello Kaye, I greatly appreciate the fact that you are here.

I just want to clarify

1. whether this research

http://www.sciencedaily.com/releases/2008/04/080424140418.htm

use the T-rex specimen or not and what are the implications of this discovery.

2.Are there currently any other Genetic or molecular evidence concerning Dinosaur-bird ancestry?

Thank you

Don

PS.
Dear Gary,

I just have to ask him again, I apologize if you feel offended.

Don.

Draconiz · 30 July 2008

Indicating Dinosaur-bird ancestry.

Sorry, it has been a long day,

iml8 · 30 July 2008

GuyeFaux said: Still can't tell if Poe's Law applies, particularly after seeing "I'm a Zealot for Jesus" coffee-cups in the online store.
The farther you go down in the OBJECTIVE: MINISTRIES website link hierarchy, the stronger the pulling on one's leg becomes until it approaches dislocation. There's some real howlers buried on that site. At the home page it's so deadpan that it's hard to tell, and a lot of people on both sides of the fence have been taken in. During the recent shootout between Conservapedia and Dr. Richard Lenski, "Dr. Paley" demonstrated his genius for handing the lunatic fringe juuuuust enough rope to hang themselves with: INFILTRATE. SUBVERT. DESTROY. White Rabbit (Greg Goebel) http://www.vectorsite.net/tadarwin.html

Gary Hurd · 30 July 2008

I would next expect that Asara will argue that they were looking at actual sequence data and not merely an IR. (I must say that I found your IR data most striking).

However, given the immuno data of Schweitzer, I just don't see a way that a "biofilm" has the specificity for an avian v.s. crocodilian v.s. rabbit (IIRC) result.

I am very interested in your results, as I have written a bit about this over the years.

Tom Kaye · 30 July 2008

Draconiz said: use the T-rex specimen or not
No we did not examine the original T.rex material. Tom

Draconiz · 30 July 2008

Dear Tom.

Thanks, I just used the study as an evidence for common ancestry between Dinosaurs and birds. If any creotard tries to spin this study to refute me I can use your response as a reply to them.

I owe you a beer. :p

Don

Gary Hurd · 30 July 2008

I have a dinner break from the 'intertudes.' See you in an hour or so.

Tom Kaye · 30 July 2008

Gary Hurd said: I would next expect that Asara will argue that they were looking at actual sequence data and not merely an IR. (I must say that I found your IR data most striking). However, given the immuno data of Schweitzer, I just don't see a way that a "biofilm" has the specificity for an avian v.s. crocodilian v.s. rabbit (IIRC) result. I am very interested in your results, as I have written a bit about this over the years.
Gary, Our study was first and foremost a physical survey of these specimens because SEM's etc. were the tools at our disposal. The intricate geochemistry/biochemistry is not our area of expertise and hence we have not commented on this. We are quite happy to accept the protein work at face value. The only thing we questioned is the quantity of detected dino protein. A femptogram of protein does not seem to be enough to make the branching tubes we have both shown. One carbon date is not enough to hang your hat on. We found that out when we called and they said "you only want one!?". We had to spend our own money so one was it. We reported what came back and as you see, we didn't say much more about it. Once a biofilm is mineralized it could be any age in our opinion. Since the biofilms cover the framboids, we think the framboids came first and could be REALLY old. I think realistically it's going to take a third party to come in with the proper team that can look at both sets of data and formulate the proper tests (as your already discussing). It's not within our capability to take it much farther and we welcome others to do so. Our SEM stubs will be available at the Burke in a few weeks and if anyone wants a piece of our bones just email me. Thanks Tom

Gary Hurd · 30 July 2008

AMS dates are not cheap, although the price has come down a lot since the 1980s. A real problem is that they use such small samples, any contamination is going to totally blow your date. I had one kid working for me as field crew, and he insisted on smoking in or around his unit. I took one C14 sample from material he collected and it was 500 years younger than any other data from that site.

Potentially, exposure to air could contaminate an organic rich material. I prefer using charcoal, or collagen. But, your results have an important implication there as well. If there is a significant bacterial load that is actively metabolizing modern carbon, and appears to behave like bone collagen, many other C14 dates might be younger than the parent bones really are.

That might be a funding angle all by itself. (I work for 5% plus beer).

Michael J · 30 July 2008

It looks like that there are still questions unanswered but if it ends up being biofilm then using CSI and EF I make three predictions:
1. Some creationists for the next 20 years will still say "what about the soft tissue found in the dinosaur fossils"
2. Others will say that that this is another example of Darwinist Hoaxes just like the butterflies
3. Others will say that see science is wrong again, the Bible is the only source of truth

DistendedPendulusFrenulum · 30 July 2008

GuyeFaux said: And the banana is the atheist's worst nightmare.
Actually, it is the politico-religionist's worst nightmare, since the banana in its natural form contains tasteless starch and enormous seeds and is inedible. The banana you see in the video is the result of artificial selection--that's right, it's a seedless, sterile variant selected by people. . .

stevaroni · 30 July 2008

The banana you see in the video is the result of artificial selection–that’s right, it’s a seedless, sterile variant selected by people…

Wild bananas are not really edible. They have large, indigestable seeds, and as a food source are primarily a source of starch, like tapioca. The "fruity" banana you find at the local market is almost certainly a Cavendish, the end result of hundreds of years of selective breeding and developed primarily for its robustness during transport. Cavendish bananas are seedless, and therefore must be propagated by cuttings. Since they are, in essence, clones, they have had increasing difficulties over the years with rapidly spreading blights which take out entire plantations in one fell swoop. According to Skepticwiki

The modern banana is the result of a well-documented chance mutation during the nineteenth century: Those first bananas that people knew in antiquity were not sweet like the bananas we know today, but were cooking bananas or plantain bananas with a starchy taste and composition. The bright yellow bananas that we know today were discovered as a mutation from the plantain banana by a Jamaican, Jean Francois Poujot, in the year 1836. He found this hybrid mutation growing in his banana tree plantation with a sweet flavor and a yellow color—instead of green or red, and not requiring cooking like the plantain banana. The rapid establishment of this new exotic fruit was welcomed worldwide, and it was massively grown for world markets.

So, the creationists got one right, it turns out that the "ideally designed" food is in fact designed. Um, by man.

Stanton · 30 July 2008

DistendedPendulusFrenulum said:
GuyeFaux said: And the banana is the atheist's worst nightmare.
Actually, it is the politico-religionist's worst nightmare, since the banana in its natural form contains tasteless starch and enormous seeds and is inedible. The banana you see in the video is the result of artificial selection--that's right, it's a seedless, sterile variant selected by people. . .
Archaeological evidence suggests that humans first began cultivating banana species in Papau New Guinea around 8000 BC. Because of the problem of banana seeds, which creationists like Ray Comfort, are painfully oblivious to, almost all cultivated bananas are either descended from parthenocarpic (that is, the plant produces fruit without the flowers being pollinated) mutants, or they have been tampered with until they become triploid mutants. As a result, each banana variety has almost no genetic diversity. This is a huge problem where diseases, such as fusarium wilt, are concerned.

Stanton · 30 July 2008

The Cavendish, along with its houseplant daughter variety, the "Dwarf Cavendish," is one of several varieties grown in Vietnam and China. It was selected as the most disease-resistant out of a (pardon the pun) bunch of alternative varieties to replace the "Gros Michel" banana, which had been wiped out by fusarium wilt fungus (aka "Panama disease"). Unfortunately, a new strain of fusarium wilt, "Race 4," has cropped up and has begun plaguing numerous Southeastern Asian countries that grow and export Cavendish bananas, and there is virtually no way to combat the disease beyond breeding a new, more resistant cultivar.
stevaroni said: The "fruity" banana you find at the local market is almost certainly a Cavendish, the end result of hundreds of years of selective breeding and developed primarily for its robustness during transport. Cavendish bananas are seedless, and therefore must be propagated by cuttings. Since they are, in essence, clones, they have had increasing difficulties over the years with rapidly spreading blights which take out entire plantations in one fell swoop.

DistendedPendulusFrenulum · 30 July 2008

stevaroni said: So, the creationists got one right, it turns out that the "ideally designed" food is in fact designed. Um, by man.
Hey, and I'm just a lowly English teacher. You'd think the intellectual giants at DI would know this stuff.

stevaroni · 30 July 2008

I am always struck by the way that an offhand comment on Pandas Thumb will, sometimes within minutes, bring out detailed information on almost any subject related to biology, physics or engineering.

In the space of maybe 4 hours, I've learned more about bananas than I have in the whole rest of my life.

Whenever one of us quoted a fact sloppily, someone else corrected it with a detailed reference.

Compare that to the typical chain of informed "discussions" over on the ID blogs, where most conversations begin and end with bronze-age religious texts as authoritative sources.

I have seen sciences "peer review" at work, and I have seen IDs "peer review" at work, and they are two distinctly different things.

Slarty Bardfast · 31 July 2008

Why are all fundamentalists retards?
HR Pufnstuf said: The propagandists for the religion of evolutionism thought that the existence of soft dinsaur tissue would win them more converts until Christians pointed out what that would mean for their "millions of years" fantasy--so now, they are in backtrack mode!

Frank J · 31 July 2008

During the recent shootout between Conservapedia and Dr. Richard Lenski, “Dr. Paley” demonstrated his genius for handing the lunatic fringe juuuuust enough rope to hang themselves with: INFILTRATE. SUBVERT. DESTROY.

— iml8
I only wish more fellow "Darwinists" would take more pointers from "Richard Paley" (note how it combines the most prominent names (William Paley) and against (Richard Dawkins) design). The "dinosaur soft tissue" example is a great opportunity to get different "kinds" of anti-evolutionist to demonstrate their hopeless disagreements and their efforts to cover them up. Most of those promoting "academic freedom" (aka "academic anarchy") will not use these findings as evidence for a young Earth or a young biosphere. Assuming that is tantamount to foot-shooting.

Frank J · 31 July 2008

Hey, and I’m just a lowly English teacher. You’d think the intellectual giants at DI would know this stuff.

— DistendedPendulusFrenulum
They do know this stuff. Maybe not as well as the average biologist, but probably better than the average English teacher, or even chemist (what I am). So they know what to include, what to leave out, what to misrepresent, and how to do it to best mislead their target audience. They love to trot out how scientists use "design arguments" in archaeology and forensics, but when they are pointed out the simple, inconvenient fact that such methods only work when one has independent evidence of designers of the relevant "caliber," they go into "hyper-spin" mode.

iml8 · 31 July 2008

Frank J said: I only wish more fellow "Darwinists" would take more pointers from "Richard Paley" (note how it combines the most prominent names (William Paley) and against (Richard Dawkins) design).
I think that "Dr. Paley" is definitely an unusual case. Few would have the patience or the skill to get into Darwin-basher forums and convincingly play along with the chatter, waiting for the time when the contributors have worked worked themselves into an impossible position -- and then giving an ever-so-slight nudge that snaps the rope tight around the collective throat. However, it is still true that the noisy ankle-biters who show up on PT are often taken far too seriously -- when the reality is that it's like arguing with a concrete block. Elmer Fudd doesn't put on a better act as a "straight man". White Rabbit (Greg Goebel) http://www.vectorsite.net/tadarwin.html

Frank J · 31 July 2008

iml8:

I should add that I don't recommend copying all, or even a majority, of "Paley's" methods. But there are a few lessons that we can even learn from - gasp - people like Dembski. The ought-to-be-obvious one is "don't take the bait." Or - pardon the mixed metaphor - "don't feed trolls."

Jon Fleming · 31 July 2008

Tom Kaye from the PLoS paper signing in ... I am willing to answer any reasonable questions.
A somewhat peripheral question, if I may ... When you did the 14C date, what information were you asked to supply about the expected date of the sample (how old you thought it was) and what information did you supply?

ryan cuggy · 31 July 2008

bornagain77 said: The Cambrian Explosion - Darwin's Worst Nightmare http://www.godtube.com/view_video.php?viewkey=13d268e7356e095e9cad
oh [i]please[/i]

ryan cuggy · 31 July 2008

one day, I will remember to use the appropriate tags on the for the appropriate software.

ryan cuggy · 31 July 2008

...and maybe even remember to hit backspace. /facepalm

jackstraw · 31 July 2008

stevaroni said:

The banana you see in the video is the result of artificial selection–that’s right, it’s a seedless, sterile variant selected by people…

Wild bananas are not really edible. They have large, indigestable seeds, and as a food source are primarily a source of starch, like tapioca. The "fruity" banana you find at the local market is almost certainly a Cavendish, the end result of hundreds of years of selective breeding and developed primarily for its robustness during transport. Cavendish bananas are seedless, and therefore must be propagated by cuttings. Since they are, in essence, clones, they have had increasing difficulties over the years with rapidly spreading blights which take out entire plantations in one fell swoop. According to Skepticwiki

The modern banana is the result of a well-documented chance mutation during the nineteenth century: Those first bananas that people knew in antiquity were not sweet like the bananas we know today, but were cooking bananas or plantain bananas with a starchy taste and composition. The bright yellow bananas that we know today were discovered as a mutation from the plantain banana by a Jamaican, Jean Francois Poujot, in the year 1836. He found this hybrid mutation growing in his banana tree plantation with a sweet flavor and a yellow color—instead of green or red, and not requiring cooking like the plantain banana. The rapid establishment of this new exotic fruit was welcomed worldwide, and it was massively grown for world markets.

So, the creationists got one right, it turns out that the "ideally designed" food is in fact designed. Um, by man.
This may seem a nitpick, but I don't think so........... The banana we now eat is in no way "designed". The mutation that created it was random. It has been selectively chosen for certain traits. So if the anti-evolutionists want to use the banana as an example of "Intelligent Choosing" then that's OK only then IC (Intelligent Choosing) will get mixed up with IC (Irreducible Complexity).

iml8 · 31 July 2008

Frank J said: The ought-to-be-obvious one is "don't take the bait." Or - pardon the mixed metaphor - "don't feed trolls."
It might seem to be obvious, but it is a fact of life on online forums that, no matter how blatant and even incoherent the troll, somebody is guaranteed to argue with him. I'll mock them sometimes but even that gets dull in a hurry. White Rabbit (Greg Goebel) http://www.vectorsite.net/tadarwin.html

Frank J · 31 July 2008

This may seem a nitpick, but I don’t think so.….…… The banana we now eat is in no way “designed”. The mutation that created it was random. It has been selectively chosen for certain traits. So if the anti-evolutionists want to use the banana as an example of “Intelligent Choosing” then that’s OK only then IC (Intelligent Choosing) will get mixed up with IC (Irreducible Complexity).

— jackstraw
That’s not a nitpick, but another example we can us to show how ID promoters play word games. In a way the bananas we now eat are designed (artificially selected), but that point is moot because design in general can’t be falsified. One could argue that artificial selection is goal-oriented and that natural selection is not. Or even that the “goal-oriented” is an illusion (along with free will) and that nature has goals that we just haven’t detected yet, but all that detracts from the main point, and thus amounts to “taking the bait.” If ID is ever to be an alternative to evolution, and it is increasingly clear that it has no intentions of trying, the focus should be not on whether something is designed, but how and when that “design” is built in to functional biological systems. It’s interesting that you mention “random mutations.” Michael Behe’s “Edge of Evolution” could be a sign that IDers are giving up focusing on the “limits” of natural selection, and retreating into the “limits” of “random” mutation. If they think that the designer occasionally inserts some “directed macromutations” (up to and including the life-from-scratch “macromutation” that their classic creationist fans desperately hope for), they need to start specifying in what lineages they occurred and when. And we need to keep demanding that they put up or shut up.

Gary Hurd · 31 July 2008

I looked a bit into bacteria living in rock, particularly meteorite, for a review I wrote of Walt Brown's creationist book, In the Beginning: Compelling Evidence for Creation and the Flood.

Giuseppe Geraci et al., “Microbes in Rocks and Meteorites,” (Rendiconti Accademia Nazionale dei Lincei, Vol. 12, No. 9, 2001, p. 51) claims to have documented living bacterial colonies in meteors. This article was published with a long list of objections and cautions that its conclusions were provisional, and that there were many doubts regarding methods used by the principal investigators. Forty years of meteorite investigations have always found terrestrial contamination to be the source of microorganisms found in meteorites, e.g. “Bacterial Contamination of Some Carbonaceous Meteorites” J. ORO T. TORNABENE (1965 SCIENCE, VOL. 150, pg. 1047-1048). The probability of contamination increases in direct proportion to the amount of handling the samples are subjected to under unsterile conditions. The two meteorite samples examined by Giuseppe Geraci had been recovered, handled and publicly displayed in museums for many decades, one for over a century.

Tom (if you check back), my last question is, "What were the curation conditions of the examined fossils used in Kaye et al?" I don't see this data in your paper.

stevaroni · 31 July 2008

Frank J writes... If they think that the designer occasionally inserts some “directed macromutations”...

I love it! Macromutation can be the new macroevolution! Time for the new model year from the ID guys anyway, the '08 arguments are already getting stale.

Tom Kaye · 31 July 2008

When you did the 14C date, what information were you asked to supply about the expected date of the sample (how old you thought it was) and what information did you supply?
I talked with the head guy for carbon dating at Geochron. I told him what the project was about and he thought it would be a bad idea to send the sample to the lab labeled "preserved t.rex tissue" so he labeled it "plant fibers" and I don't think he gave them any more info than that. He initially tried to inform me that 14C couldn't go past 50k or so years. I had to explain that if it was really old, there would be no radio carbon in it at all and thats what we were trying to determine. Tom

Gary Hurd · 31 July 2008

Tom Kaye replied to me in an email, and he invited me to share the details here.

He and his team excavated all the materials they tested over the course of time. The paleo speciments were stored in a warehouse in ziploc bags until they were selected for this analysis.

Thanks.

Eric Finn · 31 July 2008

Frank J said: [...]. It’s interesting that you mention “random mutations.” Michael Behe’s “Edge of Evolution” could be a sign that IDers are giving up focusing on the “limits” of natural selection, and retreating into the “limits” of “random” mutation. If they think that the designer occasionally inserts some “directed macromutations” (up to and including the life-from-scratch “macromutation” that their classic creationist fans desperately hope for), they need to start specifying in what lineages they occurred and when. And we need to keep demanding that they put up or shut up.
It may be very difficult to tell, if a series of (truly) random mutations have occurred, instead of random mutations plus a few subtle "directed mutations". We have only one history to study. Occam's razor may help one to choose the hypothesis with least additional assumptions, provided they all explain observations equally well. Teleological evolution, in general, can not be overruled (in my opinnion). Thus, asking creationist to specify lineages and time stamps is futile. Of course, if the claim is about major "directed macromutations", then we should be able to find some evidence, as you indicated. Cambrian explosion has sometimes been presented as such an evidence. On the other hand, the argument would be back to the claim that "the current evolutionary theory can't explain this". Regards Eric

Frank J · 31 July 2008

Teleological evolution, in general, can not be overruled (in my opinnion). Thus, asking creationist to specify lineages and time stamps is futile.

— Eric Finn
If by "overruled" you mean falsifiable, IDers have 2 problems if they try to weasel out of "connecting the dots." First, like classic creationists, they swear that their "theory" is falsifiable. And while they still refuse to "specify lineages and time stamps," they can't ignore the fact that classic creationists have already done that. The cat is out of the bag. They have testable alternate hypotheses ready-made for them. With or without design, IDers cannot have it both ways. If evolution's claims are subject to intense scrutiny (actually cherry picking and quote mining specifically geared to promote unreasonable doubt) then they need to do the same for the mutually contradictory YEC and OEC claims. Otherwise they can whine all they want that ID "is not" creationism, the fact is that they enable it, and that's counts a lot more than whether one calls ID "creationism" or not.

Eric Finn · 31 July 2008

Frank J said: If by "overruled" you mean falsifiable, IDers have 2 problems if they try to weasel out of "connecting the dots." First, like classic creationists, they swear that their "theory" is falsifiable. And while they still refuse to "specify lineages and time stamps," they can't ignore the fact that classic creationists have already done that. The cat is out of the bag. They have testable alternate hypotheses ready-made for them.
Yes, I did mean both "falsified" and "falsifiable". Sorry about my choice of words. Classic creationism does make predictions. Intelligent Design does not make any predictions at all. Teleological evolution does not make any predictions different from the predictions of the standard evolutionary theory accepted today.
With or without design, IDers cannot have it both ways. If evolution's claims are subject to intense scrutiny (actually cherry picking and quote mining specifically geared to promote unreasonable doubt) then they need to do the same for the mutually contradictory YEC and OEC claims. Otherwise they can whine all they want that ID "is not" creationism, the fact is that they enable it, and that's counts a lot more than whether one calls ID "creationism" or not.
I agree that ID is clearly creationism in disguise, and is used mainly for political goals. My point was that it is futile to attack beliefs that are not falsifiable. I am fully aware that you do not tend to do any such thing. Other arguments seem to boil down to 'Your theory does not explain this phenomenon, thus your sticking to that theory is an evidence of a philosophical bias". As a piece of science, ID should be discussed next time, when the proponents of ID make their first verifiable prediction that is based on any kind of ID hypothesis (to be published). As a cultural phenomenon, ID will be discussed for a long time, I'm afraid. Regards Eric

Eupraxsopher · 31 July 2008

The Cambrian explosion is kind of a horrible term, as the variety of organisms likely still came about by gradual evolution. The 'sudden' appearance of myriad fauna may have more to do with the chance amount of fossiliferous rock preserved in that time. We only get glimpses.

Frank J · 31 July 2008

I agree that ID is clearly creationism in disguise,...

— Eric Finn
While I agree with you mean, I never state it that way, because most people who don't follow the "debate" define "creationism" as "honest belief in a ~6000 year ago, abrupt, independent origin of many 'kinds'." Both the ID strategy, and the apparent beliefs of most major ID promoters, are nothing like that. In contrast, we critics of anti-evolution pseudoscience define "creationism" as "any strategy that promotes unreasonable doubt of evolution and proposes a design-based alternative. And no one can deny that that includes ID. Whenever someone says that ID "is" creationism, IDers quickly and effectively counter it by exploiting the different definitions.

...and is used mainly for political goals.

— Eric Finn
That part is so obvious that they're not even denying it anymore.

Eric Finn · 31 July 2008

Eupraxsopher said: The Cambrian explosion is kind of a horrible term, as the variety of organisms likely still came about by gradual evolution. The 'sudden' appearance of myriad fauna may have more to do with the chance amount of fossiliferous rock preserved in that time. We only get glimpses.
An explosion filling a time span of 10 to 30 million years might indeed sound horrible as a description of an explosion. There were soft-bodied animals in the Precambrian. We know about them. Why do we know so little about the transition? Was there really a change in the fossilization, or in the way fossiliferous rock was preserved? I am superficially aware of some of the ideas Stephen Gould had. How do you find those ideas? Regards Eric

Peter Henderson · 31 July 2008

The banana you see in the video is the result of artificial selection–that’s right, it’s a seedless, sterile variant selected by people

It was designed by the European Union…

Eric Finn · 31 July 2008

Frank J said:

I agree that ID is clearly creationism in disguise,...

— Eric Finn
While I agree with you mean, I never state it that way, because most people who don't follow the "debate" define "creationism" as "honest belief in a ~6000 year ago, abrupt, independent origin of many 'kinds'." Both the ID strategy, and the apparent beliefs of most major ID promoters, are nothing like that. In contrast, we critics of anti-evolution pseudoscience define "creationism" as "any strategy that promotes unreasonable doubt of evolution and proposes a design-based alternative. And no one can deny that that includes ID.
I think I understand your point. Maybe that kind of distinction is well worth of making. Consequently, it may not be a good idea to re-use established terms in new meanings, especially as labels? Regards Eric

Frank J · 31 July 2008

Maybe that kind of distinction is well worth of making.

— Eric Finn
~3-6 years ago I tried in vain to get fellow critics to admit that ID is not "creationism". Finally I gave up and started using the term "classic creationism" for those strategies other than ID, i.e. YEC and OEC. There too I try to refer to the strategies of the professionals and obsessed amaateurs, not the honest, mistaken beliefs of those who haven't given 5 minutes' thought past the usual misleading sound bites. Whatever way we say it, the investment of a few sentences that prevents the activists from spreading misinformation is well worth it.

GSLamb · 31 July 2008

Every time I read "Cambrian explosion" I imagine groups of stunned dinosaurs violently flying into bits.

I'm sure images like that would keep Darwin up at night, but this would hardly be his worst nightmare.

Kevin B · 31 July 2008

GSLamb said: Every time I read "Cambrian explosion" I imagine groups of stunned dinosaurs violently flying into bits. I'm sure images like that would keep Darwin up at night, but this would hardly be his worst nightmare.
Part of the world I'm from it's pronounced "cam-brian" (as in Monty Python) and is considered to be a suitable name for a pub. I tend to visualise "Cambrian explosion" as a problem with a beer keg. Not that that bothers me. (It might different if it were cider.) Are you sure that your stunned dinosaurs aren't anything to do with the Large Hadrosaur Collider?

iml8 · 31 July 2008

Frank J said: Whatever way we say it, the investment of a few sentences that prevents the activists from spreading misinformation is well worth it.
I just call them "Darwin-bashers" and be done with it. I've never seen anyone protest, possibly because it's unfamiliar. They never pick up the needling context in it: no matter how the package is wrapped, all that's inside is a pure "negative argument". White Rabbit (Greg Goebel) http://www.vectorsite.net/tadarwin.html

Henry J · 31 July 2008

I.D. = evolved Creationism.

(Or would "devolved" work better there?)

I tend to use "anti-evolutionist" for the generic label.

Henry

GuyeFaux · 31 July 2008

I just call them “Darwin-bashers”...

It's slightly perverse but we should just start calling them "Darwinists". After all, they're the ones religiously obsessed with what Darwin said or believed. It's always them prefacing with "Darwin thought this", "Darwin never knew that", "Darwin's Black Box", "Was Darwin Wrong?", etc. etc. It's a masochistic sort of idolatry.

Saddlebred · 31 July 2008

Henry J said: I.D. = evolved Creationism.
holy shit i never knew that!!!!111!!!one1!!!!eleven!!!11!!! =P

Steven Salzberg · 31 July 2008

Seven protein fragments were originally reported in 2007 (in Science) by Asara, Schweitzer, and colleagues. However, this study was poorly done and has come under criticism by other scientists who are more expert in mass spectrometry than either Asara or Schweitzer (neither of whom is an expert on interpretation of mass spec data). As a result they revised (in a letter to Science in Sept 2007) one of their interpretations, reducing the number of supposed T. rex fragments to 6. Gary Hurd points out a further discussion - printed in a technical letter to Science in January 2008 - that was pretty devastating to Asara and Schweitzer's claims. Essentially, they didn't perform adequate tests to show that the T. rex DNA was truly ancient, and it almost certainly was a contaminent. Further evidence - re-analysis of the original mass spec data - is likely to show that the protein fragments don't match birds particularly well (as the original article claimed), but instead match bacteria even better. Other articles are pending (not by me) that will make this argument more clearly.

MPW · 31 July 2008

Gary Hurd said: I had one kid working for me as field crew, and he insisted on smoking in or around his unit. I took one C14 sample from material he collected and it was 500 years younger than any other data from that site.
Seriously? Where'd you bury the body?

Gary Hurd · 31 July 2008

MPW said:
Gary Hurd said: I had one kid working for me as field crew, and he insisted on smoking in or around his unit. I took one C14 sample from material he collected and it was 500 years younger than any other data from that site.
Seriously? Where'd you bury the body?
I just reported the data in a footnote, and never hired him again. Years later, the same sort of sloppy work caused me to sever a partnership. I did OK on the money end, and avoided being professionally associated with fools.

Kevin B · 1 August 2008

Henry J said: I.D. = evolved Creationism. (Or would "devolved" work better there?) I tend to use "anti-evolutionist" for the generic label. Henry
I thought it was firmly established that ID didn't "evolve" from creationism. It was done by conscious design by the authors of "Of Pandas and People" with a text editor.

Frank J · 1 August 2008

It’s slightly perverse but we should just start calling them “Darwinists”. After all, they’re the ones religiously obsessed with what Darwin said or believed. It’s always them prefacing with “Darwin thought this”, “Darwin never knew that”, “Darwin’s Black Box”, “Was Darwin Wrong?”, etc. etc. It’s a masochistic sort of idolatry.

— GyueFaux
I'd be your biggest backer. But alas, you have less of a chance of than happening that I have of fellow critics agreeing that ID is not "creationism" (but nevertheless a pseudoscience that indirectly promotes it). I can't even get pro-science people to stop using the word "Darwinism." They don't just ignore me, but even defend it's use; their defense reads like "it's my foot, and I'll shoot it if I want to." The bigger issue is how words and definitions are established. Even those who reject "memetics" will admit that it's a "bottom up" approach, and not by overarching "design". It starts small and unnoticed, then "catches on." Sound familiar? Many "Darwinists" (pro- and anti-evolution "kinds") will disagree, but I think that linguistic evolution is more than just an analogy of biological evolution - it's part of it. On that note...

I.D. = evolved Creationism.

— Henry J
While the post-Dover (and "cdesign proponentsists") books apparently analyze it in more detail, the "speciation" of creationism into classic creationism and ID is outlined in "Tower of Babel" (Robert T. Pennock, 1999). In the same book he discusses linguistic evolution as a way introduce biological evolution to those who object to it but are not beyond hope.

David Stanton · 1 August 2008

Frank J,

I'm with you on this. I think we should use the terms "creationism" and "creationist" and object strongly to the common usage of the terms "evolutionism" and "evolutionist". This is more important than the benefits of any shorthand usage.

I also like to refer to ID specifically as a type of creationism. While you might be correct that, technically speaking, this is not entirely accurate, given the duplicitious nature of ID advocates, it certainly is appropriate as a descriptor of the origin and true motivation of most individuals who identify themselves as ID supporters. Why should we help them perpatrate a scam?

Of course, I think we should also be very careful to use the term "hypothesis" whenever appropriate as well. That would certainly help our cause. I cringe when I hear the inapporpriate use of the term "theory" as I did on CSI last night. I love to use that show as an example of how science works.

This is a PR battle, at least in part, and we shouldn't roll over and play dead when some dipstick tries to swiftboat entire fields of science just to get the chance to brainwash young children at taxpayer expense.

Frank J · 1 August 2008

David Stanton,

I use "Darwinism/Darwinists" and "evolutionists" only in quotes. "Evolutionism" is a story in itself; I never leave it to the context to suggest that I am mocking it.

As for "creationism/creationists", the most important distinction ought to be between the anti-evolution activists and the "rank and file believers." There really is no "rank and file IDer"; they are either some "kind" of creationist (including Omphalos) or maybe a TE who has more sympathy for the political/religious ideology of the activists than with mainstream science (which has no ideology). Also, when I say "IDer" I mean "anti-evolution activist who prefers the 'don't ask, don't tell what the designer did when' approach.

Bottom line, never say "creationism/creationists" without specifying what "kind" if there are people listening/reading who define it as "honest belief/believers in a ~6000 year ago creation" and others who define it as "any strategy/strategist that misrepresents evolution and proposes a design-based alternative."

Frank J · 1 August 2008

Ouch. See how easy it is to lazily say "creationist"?!

Please change "..some 'kind' of creationist.." in the middle paragraph of my 10:21 comment to "..some 'kind' of believer of classic creationism..".

Once again in case anyone didn't notice: By "classic creationism" I mean YEC or OEC, IOW, an anti-evolution position that specifically denies common descent and makes testable statements of basic "whats" and "whens" of natural history.

Gary Hurd · 1 August 2008

Steven Salzberg http://genefinding.blogspot.com/2008/07/preserved-t-rex-or-bad-science.htmlhas some further thoughts about Schweitzer's research that I recommend.

Henry J · 1 August 2008

Yeah, that "evolved Creationism" analogy doesn't really work, does it. It analogy doesn't work when somebody goes and actually examines the details - why'd somebody have to go and do that, it's like they're tying to do science or something. Oh wait...

Henry

David Willis · 15 September 2008

To Tom Kaye,

I noticed this from 7/30: "One carbon date is not enough to hang your hat on. We found that out when we called and they said “you only want one!?”. We had to spend our own money so one was it. We reported what came back and as you see, we didn’t say much more about it. Once a biofilm is mineralized it could be any age in our opinion. Since the biofilms cover the framboids, we think the framboids came first and could be REALLY old."

What is your explanation of your getting a 135% of modern content result? And why do you think it is relevant at all to C14 test the bacterial scales taken from the surface of a dino bone (as I recall, that is where they came from)...if you intent is to prove the age of the material found deep inside a bone after it has been demineralized? Surface formations by bacteria on a dino bone would be expected to give modern C14 dates I would think and therefore would be irrelevant no matter what date you got. Sorry to say it but IMO you wasted your money.

What WOULD be useful perhaps is to get some of the actual stretchy tissue inside the bone of a dino and C14 date THAT. Of course when C14 is found, as I expect it would be, even if it is far above the sensitivity thresholds of the AMS equipment, it will "have" to be attributed to contamination. Why would that not be the explanation for your C14 date...especially since it came back with an impossible number of 135%?

David Willis · 15 September 2008

Also to Tom Kaye,

I believe that your article must do more than simply suggest SIMILARITIES to biofilms...if you are going to refute the claim the tissues are dinosaurian. Wouldn't they have to be indistinguishable rather than just similar? In other words, if we had the "blood vessels" which MS found sitting side by side with the biofilm tubes you studied, and they both were stretchy and tubular...but had other very definite distinctive differences, wouldn't we have to say that you have not successfully explained the features as being from bacteria? In my opinion based on your photos and hers, the framboids you identified as inorganic don't look much like the "blood cells" she ID'd. Those spheres you showed with no nuclei don't look much like the fat discs she found WITH nuclei.

Also, I apologize for using "scales" and 135% in my prior post. I just checked your article and you reported 139% and also said the material C14 tested was from "coatings" which "appreared to be dislodged" after being pressure fractured. I am wondering if you could identify for sure that the single sample you tested came from inside the bone, since you said "APPEARED". Also, even if some bones do have biofilms inside the vascular canal walls, which are indeed formed by modern bacteria, that would not mean necessarily that what Dr. S found was only that would it? I mean she could have found true dino tissue AND there could also be modern bacteria in her vascular spaces of her samples.

One more point. What may be the most astonishing part of her work was the 4th point in the list of the 4 things she found, but you only were able to find similarities to the first 3 (in your opinion) with your work. Do you agree that you found nothing that would resemble the 4th? Here is what you wrote:

Four categories of tissues were initially discovered in 2005 [1]: (A) Clusters of spheres that showed an iron-oxygen elemental signature appeared red under the light microscope. (B) Soft, branching, tube-like structures that contained spheres. (C) Free floating “osteocytes” complete with fillapodia and (D) a filamentous mass that remained pliable and elastic. Subsequent tests using immunochemistry showed positive for proteins [3]. Three of these structures were found commonly in this survey and discussed below.

Thanks.

Mike · 24 June 2009

The dinosaur thing is a joke at Harvard, we all know the shanigans in research misconduct that occurs frequently there. . Shitzers and Asora's research is a hoax, or certainly misrepresentation. The tissues are porous ---liquids go through them. how this collagen tissue remain for 80,000,000 years?!?!!? Can federally subsidized (tax payer, white collar welfare) can Shitzer and Asora please explain this. thanks.

Henry J · 24 June 2009

Whether the tissue stays porous after death is a different question than whether it's porous while the organism was alive.

Henry

Henry J · 25 June 2009

test

David Willis · 9 October 2009

You guys trashing MS/Asara and praising Kaye need to read the 5/09 SCIENCE. In it a separate lab CONFIRMED that MS's group were right in IDing dino collagen. "Contamination" ain't gonna save the day for you.

wile_coyote · 9 October 2009

Y'know, they REALLY oughta lock down these threads after 90 days. If you don't you just get some passerby kicking on a dead horse.

SWT · 9 October 2009

wile_coyote said: Y'know, they REALLY oughta lock down these threads after 90 days. If you don't you just get some passerby kicking on a dead horse.
Well, we are back in the academic year ... time for a new batch of students to earn their creationist course credits. What safer way to enter the lion's den than to wait until the lions have moved on to another den?

Eden Helem · 29 March 2010

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